!!Oliver Pybus - Selected Publications
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McCrone et al. (2022) Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature 610:154–160\\
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Hill et al. (2022) Impact of host age on viral and bacterial communities in a waterbird population. The ISME Journal 17:215–226\\
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Attwood et al. (2022) Phylogenetic and phylodynamic approaches to understanding and combating the SARS-CoV-2 pandemic. Nature Reviews Genetics 23:547–562\\
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du Plessis et al. (2021) Establishment & lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science 371:708–12\\
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Kraemer et al. (2021) Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence. Science 373:889–95\\
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Stadler et al. (2021) Phylodynamics for cell biologists. Science 371:eaah6266\\
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Saad-Roy et al. (2021) Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes. Science 372:363-70\\
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Parag et al. (2020) Jointly inferring the dynamics of population size and sampling intensity from molecular sequences. Molecular Biology & Evolution 37:2414–29\\
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Yang et al. (2020) Assessing the role of live poultry trade in community-structured transmission of avian influenza in China. Proceedings of the National Academy of Sciences USA 117:5949-54\\
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Kraemer et al. (2020) The effect of human mobility and control measures on the COVID-19 epidemic in China. Science 368:493–7\\
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Escalera-Zamudio et al. (2020) Parallel evolution in the emergence of highly pathogenic avian influenza A viruses. Nature Communications 11:5511\\
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Rambaut et al. (2020) A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nature Microbiology 5:1403–07\\
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Lu et al. (2020) Genomic epidemiology of SARS-CoV-2 in Guangdong Province, China. Cell 181:997-1003\\
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Hoehn et al. (2019) Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination. Proceedings of the National Academy of Sciences USA 116:22664–72\\
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Hill et al. (2019) Comparative micro-epidemiology of pathogenic avian influenza virus outbreaks in a wild bird population. Philosophical Transactions of the Royal Society B 374: 20180259 \\
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Faria et al. (2018) Genomic and epidemiological monitoring of yellow fever virus transmission potential. Science 361:894–99\\
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Thézé et al. (2018) Genomic epidemiology reconstructs the introduction and spread of Zika virus in central America and Mexico. Cell Host & Microbe 23:855–64\\
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Lu et al. (2018) Molecular evolution, diversity and adaptation of H7N9 viruses in China during 2013-2017. Emerging Infectious Diseases 24:1795–805\\
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Parag & Pybus (2018) Exact Bayesian inference for phylogenetic birth-death models. Bioinformatics 34:3638–45\\
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Faria et al. (2017) Establishment and cryptic transmission of Zika virus in Brazil and the Americas. Nature 546:406–10\\
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Dellicour et al. (2017) Using viral gene sequences to compare and explain the heterogeneous spatial dynamics of virus epidemics. Molecular Biology & Evolution 34:2563–71\\
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Hoehn et al. (2017) A phylogenetic codon substitution model for antibody lineages. Genetics 206:417–27\\ \\[{ALLOW view All}][{ALLOW edit opybus}][{ALLOW upload opybus}][{ALLOW comment All}]
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