!!Timothy J. Richmond - List of Publication 
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1. T. A. Steitz, T. J. Richmond, D. Wise and D. Engelman (1974). "The ''lac'' repressor protein: molecular shape,
subunit structure, and proposed model for operator interaction based on structural studies of microcrystals",
''Proc Natl Acad Sci USA'' 71, 593-7.
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2. T. J. Richmond and T. A. Steitz (1976). "Protein-DNA interaction investigated by binding Escherichia coli lac
repressor protein to poly[[d(A.U-HgX)]", ''J Mol Biol'' __103__, 25-38.
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3. F. M. Richards and T. J. Richmond (1978). "Sovents, interfaces and protein structure", in Molecular
Interactions and Activity in Proteins, Vol. Ciba Foundataion Symposium 60, pp. 23-45, Excerpta Medica,
Amsterdam.
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4. T. J. Richmond and F. M. Richards (1978). "Packing of alpha-helices: Geometrical constraints and contact
areas", ''J Mol Biol'' __119__, 537-55.
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5. F. E. Cohen, T. J. Richmond and F. M. Richards (1979). "Protein folding: evaluation of some simple rules for
the assembly of helices into tertiary structures with myoglobin as an example", ''J Mol Biol'' __132__, 275-88.
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6. F. M. Richards, T. J. Richmond, M. J. E. Sternberg and F. E. Cohen (1980). "Formation and fluctuations of
tertiary structure - the association of alpha helices", in Protein Folding (R. Jaenicke, Ed.), pp. 117-29,
Elsevier/North-Holland Biomedical Press.
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7. J. T. Finch, R. S. Brown, D. Rhodes, T. J. Richmond, B. Rushton, L. C. Lutter and A. Klug (1981). "X-ray
diffraction study of a new crystal form of the nucleosome core showing higher resolution", ''J Mol Biol'' __145__,
757-69.
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8. T. J. Richmond, A. Klug, J. T. Finch and L. C. Lutter (1981). "The organization of DNA in the nucleosome
core particle", ''in'' Proceedings of the 2nd SUNYA Conversation in the Discipline Biomol. Stereodynamics (R.
H. Sarma, Ed.), Vol. II, pp. 109-23.
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9. T. J. Richmond, J. T. Finch and A. Klug (1983). "Studies of nucleosome structure", ''in'' Cold Spring Harb
Symp Quant Biol, Vol. 47, pp. 493-501.
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10. T. J. Richmond (1984). "Solvent accessible surface area and excluded volume in proteins: Analytical
equations for overlapping spheres and implications for the hydrophobic effect", ''J Mol Biol'' __178__, 63-89.
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11. T. J. Richmond, J. T. Finch, B. Rushton, D. Rhodes and A. Klug (1984). "Structure of the nucleosome core
particle at 7 Å resolution", ''Nature'' __311__, 532-7.
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12. A. Klug, J. T. Finch and T. J. Richmond (1985). "The crystallographic structure of the octamer histone core of
the nucleosome", ''Science'' __229__, 1109-10.
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13. T. V. O'Halloran, S. J. Lippard, T. J. Richmond and A. Klug (1987). "Multiple heavy-atom reagents for
macromolecular X-ray structure determination. Application to the nucleosome core particle", ''J Mol Biol'' __194__,
705-12.
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14. T. J. Richmond (1987). "Another folding problem?", ''Nature'' __326__, 18-9.
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15. T. J. Richmond (1987). "Partial peak scan measurement and profile analysis: application to diffractometry
using 0, 1, & 2-dimensional detectors.", in Computational Aspects of Protein Crystal Structure Analysis, DLSCI-
R25P (J. Helliwell, P. Machin, and M. Papiz, Eds.), pp. 171-8, Daresbury Laboratory.
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16. T. J. Richmond (1988). "X-ray crystallography of protein-DNA interactions", in Proceedings of the Yakult
International Symposium, Yakult Honsha, Tokyo.
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17. T. J. Richmond, M. A. Searles and R. T. Simpson (1988). "Crystals of a nucleosome core particle containing
defined sequence DNA", ''J Mol Biol'' __199__, 161-70.
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18. S. Tan, G. Ammerer and T. J. Richmond (1988). "Interactions of purified transcription factors: binding of
yeast MATalpha1 and MCM1 to cell type-specific, upstream activation Sequences", ''EMBO J'' __7__, 4255-64.
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19. T. Schnyder, D. F. Sargent, T. J. Richmond, H. M. Eppenberger and T. Wallimann (1990). "Crystallization
and preliminary X-ray analysis of two different forms of mitochondrial creatine kinase from chicken cardiac
muscle", ''J Mol Biol'' __216__, 809-12.
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20. S. Tan and T. J. Richmond (1990). "DNA binding-induced conformational change of the yeast transcriptional
activator MCM1", ''Cell'' __62__, 367-77.
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21. M. M. Struck, A. Klug and T. J. Richmond (1992). "Comparison of X-ray structures of the nucleosome core
particle in two different hydration states", ''J Mol Biol'' __224__, 253-64.
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22. M. R. Bavand, R. Wagner and T. J. Richmond (1993). "HIV-1 reverse transcriptase: polymerization
properties of the p51 homodimer compared to the p66/p51 heterodimer", ''Biochemistry'' __32__, 10543-52.
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23. B. Ganter, S. Tan and T. J. Richmond (1993). "Genomic footprinting of the promoter regions of STE2 and
STE3 genes in the yeast Saccharomyces cerevisiae", ''J Mol Biol'' __234__, 975-87.
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24. P. Koenig and T. J. Richmond (1993). "The X-ray structure of the GCN4-bZIP bound to ATF/CREB site
DNA shows the complex depends on DNA flexibility", ''J Mol Biol'' __233__, 139-54.
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25. T. J. Richmond, T. J. Rechsteiner and K. Luger (1993). "Studies of nucleosome structure", ''in'' Cold Spring
Harb Symp Quant Biol, Vol. 58, pp. 265-72.
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26. B. von Freyberg, T. J. Richmond and W. Braun (1993). "Surface area included in energy refinement of
proteins. A comparative study on atomic solvation parameters", ''J Mol Biol'' __233__, 275-92.
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27. W. Keller, P. Koenig and T. J. Richmond (1995). "Crystal structure of a bZIP/DNA complex at 2.2 A:
determinants of DNA specific recognition", ''J Mol Biol'' __254__, 657-67.
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28. L. Pellegrini, S. Tan and T. J. Richmond (1995). "Structure of serum response factor core bound to DNA",
''Nature'' __376__, 490-8.
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29. T. J. Richmond and F. Thoma (1995). "Chromatin assembly and structure", ''in'' Molecular Biology and
Biotechnology: A Comprehensive Desk Reference (R. Meyers, Ed.), pp. 175-9, VCH, Weinheim.
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30. A. J. Flaus, K. Luger, S. Tan and T. J. Richmond (1996). "Mapping nucleosome position at single base-pair
resolution by using site-directed hydroxyl radicals", ''Proc Natl Acad Sci USA'' __93__, 1370-5.
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31. T. J. Richmond and F. Thoma (1996). "Chromatin assembly and structure", ''in'' Encyclopedia of Molecular
Biology (R. Meyers, Ed.), pp. 360-70, VCH, Weinheim.
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32. S. Tan, Y. Hunziker, D. F. Sargent and T. J. Richmond (1996). "Crystal structure of a yeast TFIIA/TBP/DNA
complex", ''Nature'' __381__, 127-34.
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33. K. Luger, A. W. Maeder, R. K. Richmond, D. F. Sargent and T. J. Richmond (1997). "Crystal structure of the
nucleosome core particle at 2.8 Å resolution", ''Nature'' __389__, 251-60.
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34. K. Luger, T. Rechsteiner, A. Flaus, M. M. Waye and T. J. Richmond (1997). "Characterization of nucleosome
core particles containing histone proteins made in bacteria", ''J Mol Biol'' __272__, 301-11.
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35. A. Flaus and T. J. Richmond (1998). "Positioning and stability of nucleosomes on MMTV 3'LTR sequences",
''J Mol Biol'' __275,__ 427-41.
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36. K. Luger and T. J. Richmond (1998). "DNA binding within the nucleosome core", ''Curr Opin Struct Biol'' __8__,
33-40.
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37. K. Luger and T. J. Richmond (1998). "The histone tails of the nucleosome", ''Curr Opin Genet Dev'' __8__, 140-6.
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38. G. Panetta, M. Buttinelli, A. Flaus, T. J. Richmond and D. Rhodes (1998). "Differential nucleosome
positioning on xenopus oocyte and somatic 5 S RNA genes determines both TFIIIA and H1 binding: A
mechanism for selective H1 repression", ''J Mol Biol'' __282__, 683-97.
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39. T. J. Richmond and T. A. Steitz (1998). "Protein-nucleic acid interactions", ''Curr Opin Struct Biol'' __8__, 11-3.
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40. C. Spangenberg, K. Eisfeld, W. Stunkel, K. Luger, A. Flaus, T. J. Richmond, M. Truss and M. Beato (1998).
"The mouse mammary tumour virus promoter positioned on a tetramer of histones H3 and H4 binds nuclear
factor 1 and OTF1", ''J Mol Biol'' __278__, 725-39.
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41. S. Tan and T. J. Richmond (1998). "Crystal structure of the yeast MATalpha2/MCM1/DNA ternary
complex", ''Nature'' __391__, 660-6.
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42. S. Tan and T. J. Richmond (1998). "Eukaryotic transcription factors", Curr Opin Struct Biol 8, 41-8.
43. A. Flaus and T. J. Richmond (1999). "Base-pair resolution mapping of nucleosome positions using sitedirected
hydroxy radicals", ''Methods Enzymol'' __304__, 251-63.
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44. A. Flaus and T. J. Richmond (1999). "Base-pair resolution mapping of nucleosomes in vitro", ''Methods Mol
Biol'' __119__, 45-60.
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45. M. Goldberg, A. Harel, M. Brandeis, T. J. Rechsteiner, T. J. Richmond, A. M. Weiss and Y. Gruenbaum
(1999). "The tail domain of lamin Dm0 binds histones H2A and H2B", ''Proc Natl Acad Sci USA'' __96__, 2852-7.
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46. K. Luger, A. W. Maeder and T. J. Richmond (1999). "The nucleosome core structure at 2.0 Å resolution", in
Human FrontierWorkshop VII: Transcription Regulation ''in'' Eukaryotes (P. Chambon, T. Fukasawa, R. D.
Kornberg, and C. C. Coath, Eds.), pp. 28-35, Human Frontier Science Program,, Strasbourg.
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47. K. Luger, T. J. Rechsteiner and T. J. Richmond (1999). "Expression and purification of recombinant histones
and nucleosome reconstitution", ''Methods Mol Biol'' __119__, 1-16.
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48. K. Luger, T. J. Rechsteiner and T. J. Richmond (1999). "Preparation of nucleosome core particle from
recombinant histones", ''Methods Enzymol'' __304__, 3-19.
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49. F. Gaiser, S. Tan and T. J. Richmond (2000). "Novel dimerization fold of RAP30/RAP74 in human TFIIF at
1.7 A resolution", ''J Mol Biol'' __302__, 1119-27.
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50. K. Luger, A. W. Maeder, R. K. Richmond, D. F. Sargent and T. J. Richmond (2000). "The atomic structure of
the nucleosome core particle.", ''in'' Biomolecular Stereodynamics (R. H. Sarma, Ed.), Vol. Vol. 11, pp. 190-
200, Adenine Press, New York.
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51. T. J. Richmond and J. Widom (2000). "Nucleosome and chromatin structure", in Chromatin Structure and
Gene Expression (S. C. R. Elgin, and J. L. Workman, Eds.), pp. 1-23, Oxford University Press, Oxford.
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52. E. Santelli and T. J. Richmond (2000). "Crystal Structure of MEF2A Core Bound to DNA at 1.5 A
Resolution", ''J Mol Biol'' __297__, 437-49.
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53. S. Tan, Y. Hunziker, L. Pellegrini and T. J. Richmond (2000). "Crystallization of the yeast
MATalpha2/MCM1/DNA ternary complex: general methods and principles for protein/DNA
cocrystallization", ''J Mol Biol'' __297__, 947-59.
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54. G. Capitani, R. Rossmann, D. F. Sargent, M. G. Gruetter, T. J. Richmond and H. Hennecke (2001). "Structure
of the soluble domain of a membrane-anchored thioredoxin-like protein from Bradyrhizobium japonicum
reveals unusual properties", ''J Mol Biol'' __311__, 1037-48.
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55. M. E. Gelbart, T. J. Rechsteiner, T. J. Richmond and T. Tsukiyama (2001). "Interactions of ISW2 chromatin
remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized
templates", ''Mol Cell Biol'' __21__, 2098-106.
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56. M. Hassler and T. J. Richmond (2001). "The B-box dominates SAP-1-SRF interactions in the structure of the
ternary complex", ''EMBO J'' __20__, 3018-28.
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57. T. J. Richmond (2001). "The structural basis of gene regulation for DNA organized as chromatin", ''Chimia'' __55__,
487-92.
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58. C. A. Davey and T. J. Richmond (2002). "DNA-dependent divalent cation binding in the nucleosome core
particle", ''Proc Natl Acad Sci USA'' __99__, 11169-74.
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59. C. A. Davey, D. F. Sargent, K. Luger, A. W. Maeder and T. J. Richmond (2002). "Solvent mediated
interactions in the structure of the nucleosome core particle at 1.9 Å resolution", ''J Mol Biol'' __319__, 1097-113.
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60. E. Eichhorn, C. A. Davey, D. F. Sargent, T. Leisinger and T. J. Richmond (2002). "Crystal structure of
Escherichia coli alkanesulfonate monooxygenase SsuD", ''J Mol Biol'' __324__, 457-68.
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61. P. R. Mittl, G. Fritz, D. F. Sargent, T. J. Richmond, C. W. Heizmann and M. G. Gruetter (2002). "Metal-free
MIRAS phasing: structure of apo-S100A3", ''Acta Crystallogr D Biol Crystallogr'' __58__, 1255-61.
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62. I. Berger, C. Bieniossek, C. Schaffitzel, M. Hassler, E. Santelli and T. J. Richmond (2003). "Direct interaction
of Ca2+/calmodulin inhibits histone deacetylase 5 repressor core binding to myocyte enhancer factor 2", ''J
Biol Chem'' __278__, 17625-35.
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63. M. Bleichenbacher, S. Tan and T. J. Richmond (2003). "Novel Interactions between the components of
human and yeast TFIIA/TBP/DNA complexes", ''J Mol Biol'' __332__, 783-93.
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64. B. Dorigo, T. Schalch, K. Bystricky and T. J. Richmond (2003). "Chromatin fiber folding: requirement for the
histone H4 N-terminal tail", ''J Mol Biol'' __327__, 85-96.
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65. H. Gaillard, D. J. Fitzgerald, C. L. Smith, C. L. Peterson, T. J. Richmond and F. Thoma (2003). "Chromatin
Remodeling Activities Act on UV-damaged Nucleosomes and Modulate DNA Damage Accessibility to
Photolyase", ''J Biol Chem'' __278__, 17655-63.
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66. T. J. Richmond (2003). "The lure of DNA in chromatin.", ''in'' The Secret of Life (M. Balaban, Ed.), pp. 86-97,
Faircount, London.
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67. T. J. Richmond and C. A. Davey (2003). "The structure of DNA in the nucleosome core", ''Nature'' __423__, 145-
50.
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68. I. Berger, D. J. Fitzgerald and T. J. Richmond (2004). "Baculovirus expression system for heterologous
multiprotein complexes", ''Nat Biotechnol'' __22__, 1583-7.
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69. B. Dorigo, T. Schalch, A. Kulangara, S. Duda, R. R. Schroeder and T. J. Richmond (2004). "Nucleosome
arrays reveal the two-start organization of the chromatin fiber", ''Science'' __306__, 1571-3.
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70. D. J. Fitzgerald, C. DeLuca, I. Berger, H. Gaillard, R. Sigrist, K. Schimmele and T. J. Richmond (2004).
"Reaction cycle of the yeast Isw2 chromatin remodeling complex", ''EMBO J'' __23__, 3836-43.
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71. D. F. Sargent and T. J. Richmond (2004). "Comment on flash-cooling of macromolecular crystals to
overcome increased mosaicity by Yao, Yasutake & Tanaka (2004)", ''Acta Crystallogr D Biol Crystallogr'' __60__,
616.
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72. T. Schalch, S. Duda, D. F. Sargent and T. J. Richmond (2005). "X-ray structure of a tetranucleosome and its
implications for the chromatin fibre", ''Nature'' __436__, 138-41.
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73. D. J. Fitzgerald, I. Berger, C. Schaffitzel, K. Yamada, T. J. Richmond and I. Berger (2006). "Protein complex
expression by using multigene baculoviral vectors", ''Nat Meth'' __3__, 1021-32.
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74. T. J. Richmond (2006). "Genomics: predictable packaging", ''Nature'' __442__, 750-2.
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75. D. J. Fitzgerald, C. Schaffitzel, P. Berger, R. Wellinger, C. Bieniossek, T. J. Richmond and I. Berger (2007).
"Multiprotein expression strategy for structural biology of eukaryotic complexes", ''Structure'' __15__, 275-9.
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76. M. S. Ong, T. J. Richmond and C. A. Davey (2007). "DNA stretching and extreme kinking in the nucleosome
core", ''J Mol Biol'' __368__, 1067-74.
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77. C. Bieniossek, T. J. Richmond and I. Berger (2008). "MultiBac: multigene baculovirus-based eukaryotic
protein complex production", in Current Protocols ''in'' Protein Science, pp. 5.20.1-6, John Wiley & Sons, Inc.
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78. V. Galius, C. Leontiou, T. J. Richmond and G. Wider (2008). "Projected [[H-1,N-15]-HMQC-[[H-1,H-1]-
NOESY for large molecular systems: application to a 121 kDa protein-DNA complex",  ''Journal of
Biomolecular NMR'' __40__, 175-81.
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79. C. Bieniossek, Y. Nie, D. Frey, N. Olieric, C. Schaffitzel, I. Collinson, C. Romier, P. Berger, T. J. Richmond,
M. O. Steinmetz and I. Berger (2009). "Automated unrestricted multigene recombineering for multiprotein
complex production", ''Nat Meth'' __6__, 447-50.