Junbiao Dai - Selected Publications#

1. Li Cheng#, Shijun Zhao#, Tianyi Li#, Sha Hou#, Zhouqing Luo, Jinsheng Xu, Wenfei Yu, Shuangying Jiang, Marco Monti, Daniel Schindler, Weimin Zhang, Chunhui Hou, Yingxin Ma, Yizhi Cai, Jef D. Boeke, Junbiao Dai*. Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae. Nature Communications, 2024-1-26, 15:770, doi:10.1038/s41467-023-44511-5.

2. Lian-Ge Chen#, Tianlong Lan#, Shuo Zhang#, Mengkai Zhao#, Guangyu Luo, Yi Gao, Yuliang Zhang, Qingwei Du, Houze Lu, Bimeng Li, Bingke Jiao, Zhangli Hu, Yingxin Ma, Qiao Zhao, Ying Wang*, Wenfeng Qian*, Junbiao Dai*, Yuling Jiao*. A designer synthetic chromosome fragment functions in moss. Nature Plants, 2024-1-26, doi:10.1038/s41477-023-01595-7.

3. Guiqi Bi#, Shijun Zhao#, Jiawei Yao, Huan Wang, Mengkai Zhao, Yuanyuan Sun, Xueren Hou, Fabian B. Haas, Deepti Varshney, Michael Prigge, Stefan A. Rensing, Yuling Jiao, Yingxin Ma, Jianbin Yan*, Junbiao Dai*. Near telomere-to-telomere genome of the model plant Physcomitrium patens. Nature Plants, 2024-1-26, doi:10.1038/s41477-023-01614-7.

4. Weimin Zhang, Luciana Lazar-Stefanita, Hitoyoshi Yamashita, Michael J. Shen, Leslie A. Mitchell, Hikaru Kurasawa, Evgenii Lobzaev, Viola Fanfani, Max A.B. Haase, Xiaoji Sun, Qingwen Jiang, Gregory W. Goldberg, David M. Ichikawa, Stephanie L. Lauer, Laura H. McCulloch, Nicole Easo, S. Jiaming Lin, Brendan R. Camellato, Yinan Zhu, Jitong Cai, Zhuwei Xu, Yu Zhao, Maya Sacasa, Ryan Accardo, Leighanne A. Brammer Basta, Nicholas R. Bello, Lousanna Cai, Stephanie Cerritos, MacIntosh Cornwell, Anthony D’Amato, Maria Hacker, Kenneth Hersey, Emma Kennedy, Ardeshir Kianercy, Dohee Kim, Griffin McCutcheon, Kimiko McGirr, Nora Meaney, Maisa Nimer, Carla Sabbatini, Lisa Z. Scheifele, Lucas S. Shores, Cassandra Silvestrone, Arden Snee, Antonio Spina, Anthony Staiti, Matt Stuver, Elli Tian, Danielle Whearty, Calvin Zhao, Karen Zeller, Marcus B. Noyes, Joel S. Bader, Samuel Deutsch, Giovanni Stracquadanio, Yasunori Aizawa*, Junbiao Dai*, Jef D. Boeke*. Manipulating the 3D organization of the largest synthetic yeast chromosome. Molecular Cell, 2023-12-7, 83(23):4424-4437. doi:10.1016/j.molcel.2023.10.015.

5. Shuangying Jiang, Zhouqing Luo, Jie Wu, Kang Yu, Shijun Zhao, Zelin Cai, Wenfei Yu, Hui Wang, Li Cheng, Zhenzhen Liang, Hui Gao, Marco Monti, Daniel Schindler, Linsen Huang, Cheng Zeng, Weimin Zhang, Chun Zhou, Yuanwei Tang, Tianyi Li, Yingxin Ma, Yizhi Cai, Jef D. Boeke, Qiao Zhao*, Junbiao Dai*. Building a eukaryotic chromosome arm by de novo design and synthesis. Nature Communications, 2023-11-30,14(1):7886. doi:10.1038/s41467-023-43531-5.

6. Jee Loon Foo, Shohei Kitano, Adelia Vicanatalita Susanto, Zhu Jin, Yicong Lin, Zhouqing Luo, Linsen Huang, Zhenzhen Liang, Leslie A. Mitchell, Kun Yang, Adison Wong, Yizhi Cai, Jitong Cai, Giovanni Stracquadanio, Joel S. Bader, Jef D. Boeke, Junbiao Dai*, Matthew Chang*. Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration. Cell Genomics, 2023-11-8, 3(11):100435. doi:10.1016/j.xgen.2023.100435.

7. Zhouqing Luo*#, Kang Yu#, Shangqian Xie, Marco Monti, Daniel Schindler, Yuan Fang, Shijun Zhao, Zhenzhen Liang, Shuangying Jiang, Meiwei Luan, Chuanle Xiao, Yizhi Cai*, Junbiao Dai*. Compacting a synthetic yeast chromosome arm. Genome Biology, 2021, 22: 5.

8. Wei Liu, Zhouqing Luo, Yun Wang, Nhan Pham, Laura Tuck, Irene Pérez Pi, Longying Liu, Yue Shen, Chris French, Manfred Auer, Jon Marles-Wright, Junbiao Dai*, Yizhi Cai*. Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods. Nature communications, 2018, 9(1): 1936.

9. Zhouqing Luo#, Lihui Wang#, Yun Wang, Weimin Zhang, Yakun Guo, Yue Shen, Linghuo Jiang, Qingyu Wu, Chong Zhang, Yizhi Cai*, Junbiao Dai*. Identifing and characterizing SCRaMbLEd synthetic yeast using ReSCuES. Nature communications, 2018, 8, 9(1): 1930.

10. Weimin Zhang#, Guanghou Zhao#, Zhouqing Luo#, Yicong Lin, Lihui Wang, Yakun Guo, Ann Wang, Shuangying Jiang, Qingwen Jiang, Jianhui Gong, Yun Wang, Sha Hou, Jing Huang, Tianyi Li, Yiran Qin, Junkai Dong, Qin Qin, Jiaying Zhang, Xinzhi Zou, Xi He, Li Zhao, Yibo Xiao, Meng Xu, Erchao Cheng, Ning Huang, Tong Zhou, Yue Shen, Roy Walker, Yisha Luo, Zheng Kuang, Leslie A. Mitchell, Kun Yang, Sarah M. Richardson, Yi Wu, Bing-Zhi Li, Ying-Jin Yuan, Huanming Yang, Jiwei Lin, Guo-Qiang Chen, Qingyu Wu, Joel S. Bader, Yizhi Cai, Jef D. Boeke, Junbiao Dai*. Engineering the ribosomal DNA in a megabase synthetic chromosome. 2017, Science, 355(6329).