Mart Krupovic - Selected Publications#

● Medvedeva S, Sun J, Yutin N, Koonin EV, Nunoura T, Rinke C, Krupovic M. Three families of Asgard archaeal viruses identified in metagenome-assembled genomes. Nat Microbiol. 2022; In press.

● Koonin EV, Dolja VV, Krupovic M. The logic of virus evolution. Cell Host Microbe. 2022; In press.

● Wang F, Cvirkaite-Krupovic V, Vos M, Beltran LC, Kreutzberger MAB, Winter JM, Su Z, Liu J, Schouten S, Krupovic M*, Egelman EH*. Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome. Cell. 2022;185(8):1297-1307.e11.

● Krupovic M, Makarova KS, Koonin EV. Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom. Proc Natl Acad Sci U S A. 2022 Feb 1;119(5):e2120620119.

● Liu Y, Demina TA, Roux S, Aiewsakun P, Kazlauskas D, Simmonds P, Prangishvili D, Oksanen HM, Krupovic M. Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes. PLoS Biol. 2021 Nov 9;19(11):e3001442.

● Baquero DP, Gazi AD, Sachse M, Liu J, Schmitt C, Moya-Nilges M, Schouten S, Prangishvili D, Krupovic M. A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2105540118

● Liu J, Cvirkaite-Krupovic V, Baquero DP, Yang Y, Zhang Q, Shen Y, Krupovic M. Virus-induced cell gigantism and asymmetric cell division in archaea. Proc Natl Acad Sci U S A. 2021 Apr 13;118(15):e2022578118

● Liu J, Cvirkaite-Krupovic V, Commere PH, Yang Y, Zhou F, Forterre P, Shen Y, Krupovic M. Archaeal extracellular vesicles are produced in an ESCRT-dependent manner and promote gene transfer and nutrient cycling in extreme environments. ISME J. 2021;15(10):2892-2905.

● Krupovic M, Dolja VV, Koonin EV. The LUCA and its complex virome. Nat Rev Microbiol. 2020 Nov;18(11):661-670.

● Koonin EV, Makarova KS, Wolf YI, Krupovic M. Evolutionary entangle ment of mobile genetic elements and host defence systems: guns for hire. Nat Rev Genet. 2020 Feb;21(2):119-131

● Medvedeva S, Liu Y, Koonin EV, Severinov K, Prangishvili D, Krupovic M. Virus-borne mini-CRISPR arrays are involved in interviral conflicts. Nat Commun. 2019 Nov 15;10(1):5204

● Kazlauskas D, Varsani A, Koonin EV, Krupovic M. Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids. Nat Commun. 2019 Jul 31;10(1):3425.

● Krupovic M, Dolja VV, Koonin EV. Origin of viruses: primordial replicators recruiting capsids from hosts. Nat Rev Microbiol. 2019 Jul;17(7):449-458.

● Mizuno CM, Guyomar C, Roux S, Lavigne R, Rodriguez-Valera F, Sullivan MB, Gillet R, Forterre P, Krupovic M. Numerous cultivated and uncultivated viruses encode ribosomal proteins. Nat Commun. 2019 Feb 14;10(1):752.

● Krupovic M, Koonin EV. Multiple origins of viral capsid proteins from cellular ancestors. Proc Natl Acad Sci U S A. 2017 Mar 21;114(12):E2401-E2410.