Martin Vingron - Selected publications#

1. Marsico, A.; Huska, M. R.; Lasserre, J.; Hu, H.; Vucicevic, D.; Musahl, A.; Orom, U. A.; Vingron, M., PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. Genome biology 2013, 14, (8), R84.

2. Lasserre, J.; Chung, H. R.; Vingron, M., Finding associations among histone modifications using sparse partial correlation networks. PLoS Computational Biology 2013, 9, (9), e1003168.

3. Schulz, M. H.; Zerbino, D. R.; Vingron, M.; Birney, E., Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 2012, 28, (8), 1086-92.

4. Karlic, R.; Chung, H. R.; Lasserre, J.; Vlahovicek, K.; Vingron, M., Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences of the United States of America 2010, 107, (7), 2926-31.

5. Sultan, M.; Schulz, M. H.; Richard, H.; Magen, A.; Klingenhoff, A.; Scherf, M.; Seifert, M.; Borodina, T.; Soldatov, A.; Parkhomchuk, D.; Schmidt, D.; O'Keeffe, S.; Haas, S.; Vingron, M.; Lehrach, H.; Yaspo, M. L., A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 2008, 321, (5891), 956-60.

6. Grossmann, S.; Bauer, S.; Robinson, P. N.; Vingron, M., Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 2007, 23, (22), 3024-31.

7. Schmidt, H. A.; Strimmer, K.; Vingron, M.; von Haeseler, A., TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 2002, 18, (3), 502-4.