Igor Zhimulev - Selected publications#

• Zhimulev IF. Morphology and structure of polytene chromosomes. Adv Genet 34: 1-497, 1996
• Zhimulev IF. Heterochromatin and position effect variegation. Adv Genet 37: 1-566, 1998
• Zhimulev IF. Genetic organization of polytene chromosomes. Adv Genet 39: 1-599, 1999
• Zhimulev IF. General and Molecular Genetics (Textbook for Students). Fourth Edition. Siberian University Publishing, Novosibirsk, 479 pp., 2007 (in Russian)
• Koryakov DE, Zhimulev IF. Chromosomes. Structure and Functions (Textbook for Students). Publishing Company of SD RAS, Novosibirsk, 257 pp., 2009 (in Russian)
• Belyaeva ES, Zhimulev IF, Volkova EI, Alekseyenko AA, Moshkin YM, Koryakov DE. Su(UR)ES a gene suppressing DNA underreplication in intercalary and pericentric heterochromatin of Drosophila melanogaster polytene chromosomes. Proc Natl Acad Sci USA 95: 7532-7537, 1998
• Moshkin YM, Alekseyenko AA, Semeshin VF, Spierer A, Spierer P, Makarevich GF, Belyaeva ES, Zhimulev IF. The Bithorax Complex of Drosophila melanogaster. Underreplication and morphology in polytene chromosomes. Proc Natl Acad Sci USA 98: 570-574, 2001
• Holt RA,… Kokoza EB, Zhimulev IF,… Kafatos FC. The genome sequence of the malaria mosquito Anopheles gambiae. Science 298: 129-149, 2002
• Koryakov DE, Zhimulev IF, Dimitri P. Cytogenetics analysis of the third chromosome heterochromatin of Drospohila melanogaster. Genetics 160: 509-517, 2002
• Makunin IV, Volkova EI, Belyaeva ES, Nabirochkina EN, Pirrotta V, Zhimulev IF. The Drosophila Suppressor of Underreplicationprotein binds to late-replicating regions of polytene chromosomes. Genetics 160: 1023-1034, 2002
• Zhimulev IF, Belyaeva ES, Semeshin VF, Shloma VV, Makunin IV, Volkova EI. Overexpression of Drosophila melanogaster SuUR gene results in reversible chromatin reorganization at polytene chromosome pericentric, telomeric and intercalary heterochromatin. J Cell Sci 116: 169-176, 2003
• Koryakov DE, Domanitskaya EV, Belyakin SN, Zhimulev IF. Abnormal tissue-dependent polytenization of a block of chromosome 3 pericentric heterochromatin in Drosophila melanogaster. J Cell Sci 116: 1035-1044, 2003
• Cherbas LF, Hu X, Zhimulev I, Belyaeva E, Cherbas P. EcR isoforms in Drosophila: Testing tissue-specific requirements by targeted blockade and rescue. Development 130: 271-284, 2003
• Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Volkova EI, Alekseyenko AA, Andreyeva EN, Makarevich GF, Boldyreva LV, Nanayev RA, Demakova OV. Influence of the SuUR gene on intercalary heterochromatin in Drosophila melanogaster polytene chromosomes. Chromosoma 111: 377-398, 2003
• Zhimulev IF, Belyaeva ES. Intercalary heterochromatin and genetic silencing. BioEssays 25: 1040-1050, 2003
• Demakova OV, Kotlikova IV, Gordadze PR, Alekseenko AA, Kelley RL, Kuroda MI, Zhimulev IF. The MSL complex levels are critical for its correct targeting to the chromosomes in Drosophila melanogaster. Chromosoma 112: 103-115, 2003
• Belyaeva ES, Boldyreva LV, Volkova EI, Nanayev RA, Alekseyenko AA, Zhimulev IF. Effect of the Suppressor of Underreplication gene (SuUR) on PEV-silencing in Drosophila melanogaster. Genetics 165: 1209-1220, 2003
• Zhimulev IF, Belyaeva ES, Semeshin VF, Koryakov DE, Demakov SA, Demakova OV, Pokholkova GV, Andreyeva EN. Polytene chromosomes: 70 years in genetic research. Int Rev Cytol 241: 203-275, 2004
• Degtyarev S, Boykova T, Grishanin A, Belyakin S, Rubtsov N, Karamysheva T, Makarevich G, Akifyev A, Zhimulev I. The molecular structure of the DNA fragments eliminated during chromatin diminution in Cyclops kolensis. Genome Res 14: 2284-2294, 2004
• Belyakin SN, Christophides GK, Alekseyenko AA, Nanayev RA, Boldyreva LV, Belyaeva ES, Makunin IV, Heidelberg Fly Array Consortium, Kafatos FC, Zhimulev IF. Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories. Proc Natl Acad Sci USA 102: 8269-8274, 2005
• Gortchakov AA, Eggert H, Gan M, Mattow J, Zhimulev IF, Saumweber H. Chriz, a chromodomain protein specific for the interbands of Drosophila melanogaster polytene chromosomes. Chromosoma 114: 54-66, 2005
• Koryakov DE, Reuter G, Dimitri P, Zhimulev IF. The SuUR gene influences the distribution of heterochromatic proteins HP1 and SU(VAR)3-9 on nurse cell polytene chromosomes of Drosophila melanogaster. Chromosoma 115: 296-310, 2006
• Salvaing J, Decoville M, Mouchel-Vielh E, Bussiere M, Daulny A, Boldyreva L, Zhimulev I, Locker D, Peronnet F. Corto and DSP1 interact and bind to a maintenance element of the Scr Hoxgene: understanding the role of Enhancers of trithorax and Polycomb. BMC Biology 4: 9, 2006
• Belyaeva ES, Demakov SA, Pokholkova GV, Alekseyenko AA, Kolesnikova TD, Zhimulev IF. DNA underreplication in intercalary heterochromatin regions in polytene chromosomes of Drosophila melanogaster correlates with the formation of partial chromosomal aberrations and ectopic pairing. Chromosoma 115: 355-366, 2006
• Demakova OV, Pokholkova GV, Kolesnikova TD, Demakov SA, Andreyeva EN, Belyaeva ES, Zhimulev IF. The SU(VAR)3-9/HP1 complex differentially regulates the compaction state and degree of underreplication of X chromosome pericentric heterochromatin in Drosophila melanogaster. Genetics 175: 609-620, 2007
• Pindyurin AV, Moorman C, de Wit E, Belyakin SN, Belyaeva ES, Christophides GK, Kafatos FC, van Steensel B, Zhimulev IF. SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila. J Cell Sci 120, 2344-2351, 2007
• Andreyeva EN, Kolesnikova TD, Demakova OV, Mendez-Lago M, Pokholkova GV, Belyaeva ES, Rossi F, Corradini N, Dimitri P, Villasante A, Zhimulev IF. High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants. Proc Natl Acad Sci USA 104: 12819-12824, 2007
• Pindyurin AV, Boldyreva LV, Shloma VV, Kolesnikova TD, Pokholkova GV, Andreyeva EN, Kozhevnikova EN, Ivanoschuk IG, Zarutskaya EA, Demakov SA, Gorchakov AA, Belyaeva ES, Zhimulev IF. Interaction between the Drosophila heterochromatin proteins SUUR and HP1. J Cell Sci 121: 1693-1703, 2008
• Zhimulev IF, Koryakov DE. Polytene chromosomes. In: Encyclopedia of Life Sciences (ELS), John Wiley & Sons, Ltd: Chichester, 2009
• Yurlova AA, Makunin IV, Kolesnikova TD, Posukh OV, Belyaeva ES, Zhimulev IF. Conservation of domain structure in a fast-evolving heterochromatic SUUR protein in drosophilids. Genetics 183: 119-129, 2009
• Andreyenkova NG, Kokoza EB, Semeshin VF, Belyaeva ES, Demakov SA, Pindyurin AV, Andreyeva EN, Volkova EI, Zhimulev IF. Localization and characteristics of DNA underreplication zone in the 75C region of intercalary heterochromatin in Drosophila melanogaster polytene chromosomes. Chromosoma 118: 747-761, 2009
• Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF. Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome. Chromosoma 119: 589-600, 2010
• Babenko VN, Makunin IV, Brousentsova IV, Belyaeva ES, Maksimov DA, Belyakin SN, Maroy P, Vasil’eva LA, Zhimulev IF. Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome. BMC Genomics 11: 318, 2010
• Vatolina TYu, Boldyreva LV, Demakova OV, Demakov SA, Kokoza EB, Semeshin VF, Babenko VN, Goncharov FP, Belyaeva ES, Zhimulev IF. Identical functional organization of cell line interphase and polytene chromosomes in Drosophila melanogaster. PLoS ONE 6(10): e25960, 2011
• Demakov SA, Vatolina TYu, Babenko VN, Semeshin VF, Belyaeva ES, Zhimulev IF. Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster. BMC Genomics 12: 566, 2011
• Zhimulev IF, Belyaeva ES, Vatolina TYu, Demakov SA. Banding patterns in Drosophila melanogaster polytene chromosomes correlate with DNA-binding protein occupancy. BioEssays 34: 498-508, 2012
• Andreyenkova NG, Kolesnikova TD, Makunin IV, Pokholkova GV, Boldyreva LV, Zykova TYu, Zhimulev IF, Belyaeva ES. Late replication domains are evolutionary conserved in the Drosophila genome. PLoS ONE 8(12): e83319, 2013
• Zhimulev IF, Zykova TYu, Goncharov FP, Khoroshko VA, Demakova OV, Semeshin VF, Pokholkova GV, Boldyreva LV, Demidova DS, Babenko VN, Demakov SA, Belyaeva ES. Genetic organization of interphase chromosome bands and interbands in Drosophila melanogaster. PLoS ONE 9(7): e101631, 2014
• Nordman JT, Kozhevnikova EN, Verrijzer CP, Pindyurin AV, Andreyeva EN, Shloma VV, Zhimulev IF, Orr-Weaver TL. DNA copy-number control through inhibition of replication fork progression. Cell Reports 9: 841–849, 2014